Publications

2024

Lewinski, M., Brüggemann, M., Köster, T., Reichel, M., Bergelt, T., Meyer, K., … & Staiger, D. (2024). Mapping protein–RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2). Nature Protocols, 1-52.

Pacholewska, A., Lienhard, M., Brueggemann, M., Haenel, H., Bilalli, L., Koenigs, A., … & Schweiger, M. R. (2024). Long-read transcriptome sequencing of CLL and MDS patients uncovers molecular effects of SF3B1 mutations. bioRxiv, 2024-01.

2023

de Oliveira Freitas Machado, C., Schafranek, M., Brüggemann, M., Hernández Cañás, M. C., Keller, M., Di Liddo, A., … & Müller-McNicoll, M. (2023). Poison cassette exon splicing of SRSF6 regulates nuclear speckle dispersal and the response to hypoxia. Nucleic Acids Research.

2022

Elwakeel, E., Brüggemann, M., Wagih, J., Lityagina, O., Elewa, M. A., Han, Y., … & Weigert, A. (2022). Disruption of prostaglandin E2 signaling in cancer-associated fibroblasts limits mammary carcinoma growth but promotes metastasis. Cancer Research, 82(7), 1380-1395.

2021

Brüggemann, M. (2021). Computational studies on RNA processing in higher eukaryotes (Doctoral dissertation, Johann Wolfgang Goethe-Universität Frankfurt am Main).

2020

Busch, A., Brüggemann, M., Ebersberger, S., & Zarnack, K. (2020). iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites. Methods, 178, 49-62.

Alvelos, M. I., Brüggemann, M., Sutandy, F. R., Juan-Mateu, J., Colli, M. L., Busch, A., … & Eizirik, D. L. (2021). The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells. Life Science Alliance, 4(3).

Dold, A., Han, H., Liu, N., Hildebrandt, A., Brüggemann, M., Rücklé, C., … & Lasko, P. (2020). Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation. PLoS genetics, 16(1), e1008581.

2019

Elwakeel, E., Brüggemann, M., Fink, A. F., Schulz, M. H., Schmid, T., Savai, R., … & Weigert, A. (2019). Phenotypic plasticity of fibroblasts during mammary carcinoma development. International Journal of Molecular Sciences, 20(18), 4438.

Hildebrandt, A., Brüggemann, M., Rücklé, C., Boerner, S., Heidelberger, J. B., Busch, A., … & Beli, P. (2019). The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly (A) translation. Genome biology, 20, 1-20.